Model name: Japanese Encephalitis (JE) model (model under development)
Modellers: Hannah Clapham, Tran Minh Quan
Institution: Oxford University Clinical Research (OUCRU), Vietnam
This Japanese Encephalitis (JE) model will use a simple transmission model to estimate the impact of vaccination on JE cases. First, the relationship between currently available case data (and subsequently serological data), and environmental, climatic, animal covariates will be modelled. It will then be used to estimate transmission intensity across Southeast Asia. A simple transmission model will then model the relationship between transmission intensity, vaccine usage and cases. All models will be fitted in a Bayesian framework and uncertainty included in the output estimates by sampling from the posterior estimates.
The number of cases, deaths, and DALYs are calculated by first estimating a national or sub-national level force of infection (FOI) rate per susceptible individual from age-specific case and seroprevalence data prior to the introduction of vaccine. The FOI is then multiplied by the estimated number of susceptible individuals per age class to arrive at an expected number of infections. The number of susceptible individuals is estimated via a spatial analysis of the number of people living in JE-endemic areas. The model incorporates uncertainty in the estimation of the FOI and susceptible population sizes.