Dengue
Universidad Javeriana model
Lead modeller: Zulma Cucunubá
Link to all modelling group members
​
Institution(s): Universidad Javeriana
Brief description of model:
​
This model is currently in development. The model will support the development and implementation of i) data collation and analytics on vector-borne infections in Latin America and ii) development and implementation of R code to automatically import case data from public websites and epidemiological analysis and reports including the development of various R packages such as seforoi, sivirep development of catalytic models to analyse high-resolution dengue case-notification data from across Colombia and serological data against arboviruses using refined and computationally efficient Bayesian inferential methods and vaccineff.
​
Charniga K, Cucunubá ZM, Mercado M, Prieto F, Ospina M, Nouvellet P, Donnelly CA. Spatial and temporal invasion dynamics of the 2014-2017 Zika and chikungunya epidemics in Colombia. PLoS Comput Biol. 2021 ​
​
Charniga K, Cucunubá ZM, Walteros DM, Mercado M, Prieto F, Ospina M, Nouvellet P, Donnelly CA. Estimating Zika virus attack rates and risk of Zika virus-associated neurological complications in Colombian capital cities with a Bayesian model. Pub Med. 2022
​
Caicedo EY, Charniga K, Rueda A, Dorigatti I, Mendez Y, Hamlet A, Carrera JP, Cucunubá ZM. The epidemiology of Mayaro virus in the Americas: A systematic review and key parameter estimates for outbreak modelling. PLoS Negl Trop Dis. 2021
​
Ledien J, Cucunubá ZM, Parra-Henao G, Rodríguez-Monguí E, Dobson AP, Basáñez MG, Nouvellet P. Spatiotemporal variations in exposure: Chagas disease in Colombia as a case study. BMC Med Res Methodol. 2022
​
​
​
Model code (where available):
​
​
___________________________________________________________________________________________________________________________________________________________________
Imperial dengue model
Lead modeller: Ilaria Dorigatti
Link to all modelling group members
​
Institution(s): Imperial College London
Brief description of model:
​
To be updated.
​
​
Model code (where available):
​
​
___________________________________________________________________________________________________________________________________________________________________